.. AlphaViz documentation master file, created by
   sphinx-quickstart on Tue Jul 18 10:19:57 2022.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Documentation for AlphaViz.
=====================================

AlphaViz is an automated visualization pipeline to link the identifications found in the analysis with the original raw MS data and easily assess their individual quality or the overall quality of whole samples. AlphaViz is freely available, open-source and available on all major Operating Systems. It can be used with a graphical user interface (GUI) or as a regular Python package.

This documentation is intended as an API for direct Python use. For more information, see AlphaViz on `GitHub <https://github.com/MannLabs/alphaviz/>`_.

.. toctree::
   :maxdepth: 5

   alphaviz.gui
   alphaviz.io
   alphaviz.plotting
   alphaviz.preprocessing
   alphaviz.utils